You might find the Reproducibility resources useful.
LaTeX
Markdown
- Learn markdown
- Markdown cheatsheet
- R markdown
- Markdown basics by Daring Fireball
- knitr - for dynamic report generation with R
- Markdown example with knitr and rCharts
Thesis templates
Some examples of templates: markdown, bookdown, LaTeX…
- An updated R Markdown thesis template using the bookdown package
- A modified version Chester Ismay’s thesisdown package to provide support for Oregon State University’s thesis
- Markdown stylesheet and base files for a thesis/dissertation at University of California, Davis
- Monash PhD thesis template
- UC Berkeley thesis/dissertation LaTeX Template (ucbthesis) for R Markdown
- University of Arizona thesis template in Rmarkdown